PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010520749.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25491.2 Da    PI: 9.8019
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010520749.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr gi+KKAeELSvLCdaeva+iifs tgkl+e+ss
  XP_010520749.1  9 KKIDNVTARQVTFSKRRRGIFKKAEELSVLCDAEVALIIFSATGKLFEFSS 59
                    68***********************************************96 PP

2K-box47.86.2e-17921721999
           K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +l +L ke+e   +++R+l GedL+ Lsl +Lq+Le+ +e++l ++ +kK e ++ +i+ l k+  +l een +L+++l+
  XP_010520749.1  92 SNLVRLSKEVEDKTKQLRQLRGEDLQGLSLDDLQRLEKLVESGLGRVLEKKGESIMGEISSLEKRGAALAEENSKLKERLM 172
                     5678999*****9***************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.997161IPR002100Transcription factor, MADS-box
CDDcd002654.61E-35270No hitNo description
SuperFamilySSF554551.7E-29372IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.81387177IPR002487Transcription factor, K-box
PfamPF014867.8E-1592171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009739Biological Processresponse to gibberellin
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010220Biological Processpositive regulation of vernalization response
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAREKIRIKK IDNVTARQVT FSKRRRGIFK KAEELSVLCD AEVALIIFSA TGKLFEFSSS  60
RRMRDMLARY NLHASNLNKF NPPPLDIQLE NSNLVRLSKE VEDKTKQLRQ LRGEDLQGLS  120
LDDLQRLEKL VESGLGRVLE KKGESIMGEI SSLEKRGAAL AEENSKLKER LMTLERGKTT  180
AFGEGEIVAT RDGISLESAL TTNLSSSASG SLPDDFSDTS LKLALPFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_D2e-16373271Myocyte-specific enhancer factor 2A
3mu6_C2e-16373271Myocyte-specific enhancer factor 2A
3mu6_B2e-16373271Myocyte-specific enhancer factor 2A
3mu6_A2e-16373271Myocyte-specific enhancer factor 2A
1egw_D3e-16270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C3e-16270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B3e-16270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A3e-16270168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J3e-16370268Myocyte-specific enhancer factor 2A
3p57_I3e-16370268Myocyte-specific enhancer factor 2A
3p57_D3e-16370268Myocyte-specific enhancer factor 2A
3p57_C3e-16370268Myocyte-specific enhancer factor 2A
3p57_B3e-16370268Myocyte-specific enhancer factor 2A
3p57_A3e-16370268Myocyte-specific enhancer factor 2A
3kov_J3e-16370268Myocyte-specific enhancer factor 2A
3kov_I3e-16370268Myocyte-specific enhancer factor 2A
3kov_B3e-16370268Myocyte-specific enhancer factor 2A
3kov_A3e-16370268Myocyte-specific enhancer factor 2A
1tqe_S3e-16160160Myocyte-specific enhancer factor 2B
1tqe_R3e-16160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520749.11e-162PREDICTED: MADS-box protein AGL24-like isoform X1
SwissprotO827941e-102AGL24_ARATH; MADS-box protein AGL24
TrEMBLR0GSQ11e-103R0GSQ1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__1822__AT4G24540.11e-100(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-96AGAMOUS-like 24